Functions implemented in biomonitoR

Here the list of functions implemented in biomonitoR. Some of them have not been extensively tested, please check carefully the results!

FUNCTIONDESCRIPTION
abutotal abundance
abuTaxcalculates the absolute or relative abundance of a Taxon or of a set Taxa
asptAverage Score Per Taxon
bmwpBiological Monitoring Working Party
combTaxareturns all the combinations of Taxa at the desired taxonomic resolution
epsiEmpyrically-weighted Proportion of Sediment-sensitive Invertebrates index
eptRichness of Ephemeroptera, Plecoptera, Trichoptera
eptdbase 10 logarithm of the abundance of the selected Ephemeroptera, Plecoptera, Trichoptera and Diptera plus 1
famNumbfamily richness
genNumbgenus richness
gold1 minus the relative abundance of Gastropoda, Oligochaeta and Diptera
lifeLotic-invertebrate Index for Flow Evaluation
margalefMargalef's diversity Index
menhinickMenhinick's diversity index
pielouPielou evenness index
psiProportion of Sediment-sensitive Invertebrates index
quickRenamecompare the user taxa list with the reference database from freshwaterecology.info and suggest correct names if wrong names are present
ricTaxcalculates the richness of a Taxon or of a set Taxa at a user provided taxonomic level.
shannonShannon–Wiener index
simpsonSimpson's Diversity Index
speNumbspecies richness
taxNumbtaxa richness
whptWalley Hawkes Paisley Trigg index

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