Reference database

Reference database is a modified version of the database of freshwatercology.info and is structured as follow:

Column Taxa must contain unique elements, in other words you can not have the same name repeated twice or more. You can add missing taxa by using the same structure of the reference database and by specifying it in the dfref option:

 


# macro is the data.frame provided by the user

macro.asb <- asBiomonitor(macro, dfref = user_db, overwrite = F)

 

You must assure that the taxa you add are not already present in the default database.
Alternatively you can replace the default database with your custom database, specifying it in the overwrite option:

 


macro.asb <- asBiomonitor(macro, dfref = user_db, overwrite = T)

 

The possibility to use your own reference database is very important. As an example, if you want to correctly calculate Iberian ASPT (IASPT) you have to provide a modified version of the database (ask us for this database). This is because biomonitoR consider Ancylus and Ferrissia as Planorbidae while the IASPT consider them as belonging to the families Ancylidae and Ferrissidae, respectively.

You must assure that the custom database contains all the names of the taxa that you want anaylize with biomonitoR. WARNING!!! The current version of biomonitoR does not support uncertain classification of taxa (e.g Rhyacophila nubila/obliterata) but see this post for a workaround.

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